Softwares

famli

Accurate quantification of protein-coding sequences from short read 'shotgun' metagenomic data via addressing multiple-mapping reads.

Pycorncob

A python implementation of beta-binomial modeling for count-based data, inspired by the R corncob library.

Phylotypes

Create biologically-meaningful taxonomy-free compositional features from technically diverse 16S rRNA gene based microbiome data

ARF

Obtain and curate full-length 16S rRNA alleles from NCBI

Geneshot

A reference-free gene oriented WGS analysis workflow

Maliampi

A workflow to harmonize technically diverse 16S rRNA based microbiome data